Philosophy of Statistics

Stephen Senn: Also Smith and Jones

Stephen SennAlso Smith and Jones[1]
by Stephen Senn

Head of Competence Center for Methodology and Statistics (CCMS)

 

This story is based on a paradox proposed to me by Don Berry. I have my own opinion on this but I find that opinion boring and predictable. The opinion of others is much more interesting and so I am putting this up for others to interpret.

Two scientists working for a pharmaceutical company collaborate in designing and running a clinical trial known as CONFUSE (Clinical Outcomes in Neuropathic Fibromyalgia in US Elderly). One of them, Smith is going to start another programme of drug development in a little while. The other one, Jones, will just be working on the current project. The planned sample size is 6000 patients.

Smith says that he would like to look at the experiment after 3000 patients in order to make an important decision as regards his other project. As far as he is concerned that’s good enough.

Jones is horrified. She considers that for other reasons CONFUSE should continue to recruit all 6000 and that on no account should the trial be stopped early.

Smith say that he is simply going to look at the data to decide whether to initiate a trial in a similar product being studied in the other project he will be working on. The fact that he looks should not affect Jones’s analysis.

Jones is still very unhappy and points out that the integrity of her trial is being compromised.

Smith suggests that all that she needs to do is to state quite clearly in the protocol that the trial will proceed whatever the result of the interim administrative look and she should just write that this is so in the protocol. The fact that she states publicly that on no account will she claim significance based on the first 3000 alone will reassure everybody including the FDA. (In drug development circles, FDA stands for Finally Decisive Argument.)

However, Jones insists. She wants to know what Smith will do if the result after 3000 patients is not significant.

Smith replies that in that case he will not initiate the trial in the parallel project. It will suggest to him that it is not worth going ahead.

Jones wants to know suppose that the results for the first 3000 are not significant what will Smith do once the results of all 6000 are in.

Smith replies that, of course, in that case he will have a look. If (but it seems to him an unlikely situation) the results based on all 6000 will be significant, even though the results based on the first 3000 were not, he may well decide that the treatment works after all and initiate his alternative program, regretting, of course, the time that has been lost.

Jones points out that Smith will not be controlling his type I error rate by this procedure.

‘OK’, Says Smith, ‘to satisfy you I will use adjusted type I error rates. You, of course, don’t have to.’

The trial is run. Smith looks after 3000 patients and concludes the difference is not significant. The trial continues on its planned course. Jones looks after 6000 and concludes it is significant P=0.049. Smith looks after 6000 and concludes it is not significant, P=0.052. (A very similar thing happened in the famous TORCH study(1))

Shortly after the conclusion of the trial, Smith and Jones are head-hunted and leave the company.  The brief is taken over by new recruit Evans.

What does Evans have on her hands: a significant study or not?

Reference

1.  Calverley PM, Anderson JA, Celli B, Ferguson GT, Jenkins C, Jones PW, et al. Salmeterol and fluticasone propionate and survival in chronic obstructive pulmonary disease. The New England journal of medicine. 2007;356(8):775-89.


[1] Not to be confused with either Alias Smith and Jones nor even Alas Smith and Jones

Categories: Philosophy of Statistics, Statistics | Tags: , , , | 14 Comments

U-Phil: Mayo’s response to Hennig and Gandenberger

brakes on the 'breakthrough'

brakes on the ‘breakthrough’

“This will be my last post on the (irksome) Birnbaum argument!” she says with her fingers (or perhaps toes) crossed. But really, really it is (at least until midnight 2013). In fact the following brief remarks are all said, more clearly, in my PAPER , Mayo 2010Cox & Mayo 2011 (appendix), and in posts connected to this U-Phil: Blogging the likelihood principle, new summary 10/31/12*.

What’s the catch?

In my recent ‘Ton o’ Bricks” post,many readers were struck by the implausibility of letting the evidential interpretation of x’* be influenced by the properties of experiments known not to have produced x’*. Yet it is altogether common to be told that, should a sampling theorist try to block this, “unfortunately there is a catch” (Ghosh, Delampady, and Semanta 2006, 38): We would be forced to embrace the strong likelihood principle (SLP, or LP, for short), at least according to an infamous argument by Allan Birnbaum (who himself rejected the LP [i]).

It is not uncommon to see statistics texts argue that in frequentist theory one is faced with the following dilemma: either to deny the appropriateness of conditioning on the precision of the tool chosen by the toss of a coin, or else to embrace the strong likelihood principle, which entails that frequentist sampling distributions are irrelevant to inference once the data are obtained. This is a false dilemma. . . . The “dilemma” argument is therefore an illusion. (Cox and Mayo 2010, 298)

In my many detailed expositions, I have explained the source of the illusion and sleight of hand from a number of perspectives (I will not repeat references here). While I appreciate the care that Hennig and Gandenberger have taken in their U-Phils (and wish them all the luck in published outgrowths), it is clear to me that they are not hearing (or are unwittingly blocking) the scre-e-e-e-ching of the brakes!

No revolution, no breakthrough!

Berger and Wolpert, in their famous monograph The Likelihood Principle, identify the core issue:

The philosophical incompatibility of the LP and the frequentist viewpoint is clear, since the LP deals only with the observed x, while frequentist analyses involve averages over possible observations. . . . Enough direct conflicts have been . . . seen to justify viewing the LP as revolutionary from a frequentist perspective. (Berger and Wolpert 1988, 65-66)[ii]

If Birnbaum’s proof does not apply to a frequentist sampling theorist, then there is neither a revolution nor a breakthrough (as Savage called it). The SLP holds just for methodologies in which it holds . . . We are going in circles.

Block my counterexamples, please!

Since Birnbaum’s argument has stood for over fifty years, I’ve given it the maximal run for its money, and haven’t tried to block its premises, however questionable its key moves may appear. Despite such latitude, I’ve shown that the “proof” to the SLP conclusion will not wash, and I’m just a wee bit disappointed that Hennig and Gandenberger haven’t wrestled with my specific argument, or shown just where they think my debunking fails. What would this require?

Since the SLP is a universal generalization, it requires only a single counterexample to falsify it. In fact, every violation of the SLP within frequentist sampling theory, I show, is a counterexample to it! In other words, using the language from the definition of the SLP, the onus is on Birnbaum to show that for any x’* that is a member of an SLP pair (E’, E”) with given, different probability models f’, f”, that x’* and x”* should have the identical evidential import for an inference concerning parameter q–, on pain of facing “the catch” above, i.e., being forced to allow the import of data known to have come from E’ to be altered by unperformed experiments known not to have produced x’*.

If one is to release the breaks from my screeching halt, defenders of Birnbaum might try to show that the SLP counterexamples lead me to “the catch” as alleged. I have considered two well-known violations of the SLP. Can it be shown that a contradiction with the WCP or SP follows? I say no. Neither Hennig[ii] nor Gandenberger show otherwise.

In my tracing out of Birnbaum’s arguments, I strived to assume that he would not be giving us circular arguments. To say that “I can prove that your methodology must obey the SLP,” and then to set out to do so by declaring “Hey Presto! Assume sampling distributions are irrelevant (once the data are in hand),” is a neat trick, but it assumes what it purports to prove. All other interpretations are shown to be unsound.

______

[i] Birnbaum himself, soon after presenting his result, rejected the SLP. As Birnbaum puts it, ”the likelihood concept cannot be construed so as to allow useful appraisal, and thereby possible control, of probabilities of erroneous interpretations.” (Birnbaum 1969, p. 128.)

(We use LP and SLP synonymously here.)

[ii] Hennig initially concurred with me, but says a person convinced him to get back on the Birnbaum bus (even though Birnbaum got off it [i]).

Some other, related, posted discussions: Brakes on Breakthrough Part 1 (12/06/11)  & Part 2 (12/07/11); Don’t Birnbaumize that experiment (12/08/12); Midnight with Birnbaum re-blog (12/31/12). The initial call to this U-Phil, the extension, details here,  the post from my 28 Nov. seminar, (LSE), and the original post by Gandenberger,

OTHER :

Birnbaum, A. (1962), “On the Foundations of Statistical Inference“, Journal of the American Statistical Association 57 (298), 269-306.

Savage, L. J., Barnard, G., Cornfield, J., Bross, I, Box, G., Good, I., Lindley, D., Clunies-Ross, C., Pratt, J., Levene, H., Goldman, T., Dempster, A., Kempthorne, O, and Birnbaum, A. (1962). On the foundations of statistical inference: “Discussion (of Birnbaum 1962)”,  Journal of the American Statistical Association 57 (298), 307-326.

Birbaum, A (1970). Statistical Methods in Scientific Inference  (letter to the editor). Nature 225, 1033.

Cox D. R. and Mayo. D. (2010). “Objectivity and Conditionality in Frequentist Inference” in Error and Inference: Recent Exchanges on Experimental Reasoning, Reliability and the Objectivity and Rationality of Science (D Mayo & A. Spanos eds.), CUP 276-304.

…and if that’s not enough, search this blog.

 

Categories: Birnbaum Brakes, Likelihood Principle, Statistics | 30 Comments

U-PHIL: Gandenberger & Hennig: Blogging Birnbaum’s Proof

greg picDefending Birnbaum’s Proof

Greg Gandenberger
PhD student, History and Philosophy of Science
Master’s student, Statistics
University of Pittsburgh

In her 1996 Error and the Growth of Experimental Knowledge, Professor Mayo argued against the Likelihood Principle on the grounds that it does not allow one to control long-run error rates in the way that frequentist methods do.  This argument seems to me the kind of response a frequentist should give to Birnbaum’s proof.  It does not require arguing that Birnbaum’s proof is unsound: a frequentist can accommodate Birnbaum’s conclusion (two experimental outcomes are evidentially equivalent if they have the same likelihood function) by claiming that respecting evidential equivalence is less important than achieving certain goals for which frequentist methods are well suited.

More recently, Mayo has shown that Birnbaum’s premises cannot be reformulated as claims about what sampling distribution should be used for inference while retaining the soundness of his proof.  It does not follow that Birnbaum’s proof is unsound because Birnbaum’s original premises are not claims about what sampling distribution should be used for inference but instead as sufficient conditions for experimental outcomes to be evidentially equivalent.

Mayo acknowledges that the premises she uses in her argument against Birnbaum’s proof differ from Birnbaum’s original premises in a recent blog post in which she distinguishes between “the Sufficient Principle (general)” and “the Sufficiency Principle applied in sampling theory.“  One could make a similar distinction for the Weak Conditionality Principle.  There is indeed no way to formulate Sufficiency and Weak Conditionality Principles “applied in sampling theory” that are consistent and imply the Likelihood Principle.  This fact is not surprising: sampling theory is incompatible with the Likelihood Principle!

Birnbaum himself insisted that his premises were to be understood as “equivalence relations” rather than as “substitution rules” (i.e., rules about what sampling distribution should be used for inference) and recognized the fact that understanding them in this way was necessary for his proof.  As he put it in his 1975 rejoinder to Kalbfleisch’s response to his proof, “It was the adoption of an unqualified equivalence formulation of conditionality, and related concepts, which led, in my 1972 paper, to the monster of the likelihood axiom” (263).

Because Mayo’s argument against Birnbaum’s proof requires reformulating Birnbaum’s premises, it is best understood as an argument not for the claim that Birnbaum’s original proof is invalid, but rather for the claim that Birnbaum’s proof is valid only when formulated in a way that is irrelevant to a sampling theorist.  Reformulating Birnbaum’s premises as claims about what sampling distribution should be used for inference is the only way for a fully committed sampling theorist to understand them.  Any other formulation of those premises is either false or question-begging.

Mayo’s argument makes good sense when understood in this way, but it requires a strong prior commitment to sampling theory. Whether various arguments for sampling theory such as those Mayo gives in Error and the Growth of Experimental Knowledge are sufficient to warrant such a commitment is a topic for another day.  To those who lack such a commitment, Birnbaum’s original premises may seem quite compelling.  Mayo has not refuted the widespread view that those premises do in fact entail the Likelihood Principle.

Mayo has objected to this line of argument by claiming that her reformulations of Birnbaum’s principles are just instantiations of Birnbaum’s principles in the context of frequentist methods. But they cannot be instantiations in a literal sense because they are imperatives, whereas Birnabaum’s original premises are declaratives.  They are instead instructions that a frequentist would have to follow in order to avoid violating Birnbaum’s principles. The fact that one cannot follow them both is only an objection to Birnbaum’s principles on the question-begging assumption that evidential meaning depends on sampling distributions.

 ********

Birnbaum’s proof is not wrong but error statisticians don’t need to bother

Christian Hennig
Department of Statistical Science
University College London

I was impressed by Mayo’s arguments in “Error and Inference” when I came across them for the first time. To some extent, I still am. However, I have also seen versions of Birnbaum’s theorem and proof presented in a mathematically sound fashion with which I as a mathematician had no issue.

After having discussed this a bit with Phil Dawid, and having thought and read more on the issue, my conclusion is that
1) Birnbaum’s theorem and proof are correct (apart from small mathematical issues resolved later in the literature), and they are not vacuous (i.e., there are evidence functions that fulfill them without any contradiction in the premises),
2) however, Mayo’s arguments actually do raise an important problem with Birnbaum’s reasoning.

Here is why. Note that Mayo’s arguments are based on the implicit (error statistical) assumption that the sampling distribution of an inference method is relevant. In that case, application of the sufficiency principle to Birnbaum’s mixture distribution enforces the use of the sampling distribution under the mixture distribution as it is, whereas application of the conditionality principle enforces the use of the sampling distribution under the experiment that actually produced the data, which is different in the usual examples. So the problem is not that Birnbaum’s proof is wrong, but that enforcing both principles at the same time in the mixture experiment is in contradiction to the relevance of the sampling distribution (and therefore to error statistical inference). It is a case in which the sufficiency principle suppresses information that is clearly relevant under the conditionality principle. This means that the justification of the sufficiency principle (namely that all relevant information is in the sufficient statistic) breaks down in this case.

Frequentists/error statisticians therefore don’t need to worry about the likelihood principle because they shouldn’t accept the sufficiency principle in the generality that is required for Birnbaum’s proof.

Having understood this, I toyed around with the idea of writing this down as a publishable paper, but I now came across a paper in which this argument can already be found (although in a less straightforward and more mathematical manner), namely:
M. J. Evans, D. A. S. Fraser and G. Monette (1986) On Principles and Arguments to Likelihood. Canadian Journal of Statistics 14, 181-194, http://www.jstor.org/stable/3314794, particularly Section 7 (the rest is interesting, too).

NOTE: This is the last of this group of U-Phils. Mayo will issue a brief response tomorrow. Background to these U-Phils may be found here.

Categories: Philosophy of Statistics, Statistics, U-Phil | Tags: , , , , | 12 Comments

From Gelman’s blog: philosophy and the practice of Bayesian statistics

mayo blackboard b&w 2I hadn’t read Gelman and Shalizi’s response to my comment on their paper in the British Journal of Mathematical and Statistical Psychology. I see the issue is posted on Gelman’s blogHere’s the issue of the journal,

Philosophy and the practice of Bayesian statistics (with all the discussions!)

Philosophy and the practice of Bayesian statistics (pages 8–38)
Andrew Gelman and Cosma Rohilla Shalizi

How to practise Bayesian statistics outside the Bayesian church: What philosophy for Bayesian statistical modelling? (pages 39–44) Denny Borsboom and Brian D. Haig

Posterior predictive checks can and should be Bayesian: Comment on Gelman and Shalizi, ‘Philosophy and the practice of Bayesian statistics’ (pages 45–56)
John K. Kruschke

The error-statistical philosophy and the practice of Bayesian statistics: Comments on Gelman and Shalizi: ‘Philosophy and the practice of Bayesian statistics’ (pages 57–64)
Deborah G. Mayo

Comment on Gelman and Shalizi (pages 65–67)
Stephen Senn

The humble Bayesian: Model checking from a fully Bayesian perspective (pages 68–75)
Richard D. Morey, Jan-Willem Romeijn and Jeffrey N. Rouder

Rejoinder to discussion of ‘Philosophy and the practice of Bayesian statistics’(pages 76–80)
Andrew Gelman and Cosma Shalizi

Categories: Bayesian/frequentist, Error Statistics, Philosophy of Statistics | Leave a comment

Coming up: December U-Phil Contributions….

Dear Reader: You were probably* wondering about the December U-Phils (blogging the strong likelihood principle (SLP)). They will be posted, singly or in pairs, over the next few blog entries. Here is the initial call, and the extension. The details of the specific U-Phil may be found here, but also look at the post from my 28 Nov. seminar at the London School of Economics (LSE), which was on the SLP. Posts were to be in relation to either the guest graduate student post by Gandenberger, and/or my discussion/argument and reactions to it. Earlier U-Phils may be found here; and more by searching this blog. ”U-Phil” is short for “you ‘philosophize”.

If you have ideas for future “U-Phils,” post them as comments to this blog or send them to error@vt.edu.

*This is how I see “probability” mainly used in ordinary English, namely as expressing something like “here’s a pure guess made without evidence or with little evidence,” be it sarcastic or quite genuine.

 

Categories: Announcement, Likelihood Principle, U-Phil | Leave a comment

Severity as a ‘Metastatistical’ Assessment

Some weeks ago I discovered an error* in the upper severity bounds for the one-sided Normal test in section 5 of: “Statistical Science Meets Philosophy of Science Part 2″ SS & POS 2.  The published article has been corrected.  The error was in section 5.3, but I am blogging all of 5.  

(* μo was written where xo should have been!)

5. The Error-Statistical Philosophy

I recommend moving away, once and for all, from the idea that frequentists must ‘sign up’ for either Neyman and Pearson, or Fisherian paradigms. As a philosopher of statistics I am prepared to admit to supplying the tools with an interpretation and an associated philosophy of inference. I am not concerned to prove this is what any of the founders ‘really meant’.

Fisherian simple-significance tests, with their single null hypothesis and at most an idea of  a directional alternative (and a corresponding notion of the ‘sensitivity’ of a test), are commonly distinguished from Neyman and Pearson tests, where the null and alternative exhaust the parameter space, and the corresponding notion of power is explicit. On the interpretation of tests that I am proposing, these are just two of the various types of testing contexts appropriate for different questions of interest. My use of a distinct term, ‘error statistics’, frees us from the bogeymen and bogeywomen often associated with ‘classical’ statistics, and it is to be hoped that that term is shelved. (Even ‘sampling theory’, technically correct, does not seem to represent the key point: the sampling distribution matters in order to evaluate error probabilities, and thereby assess corroboration or severity associated with claims of interest.) Nor do I see that my comments turn on whether one replaces frequencies with ‘propensities’ (whatever they are). Read more »

Categories: Error Statistics, philosophy of science, Philosophy of Statistics, Severity, Statistics | 5 Comments

Don’t Birnbaumize that experiment my friend*–updated reblog

img_0196Our current topic, the strong likelihood principle (SLP), was recently mentioned by blogger Christian Robert (nice diagram). So ,since it’s Saturday night, and given the new law just passed in the state of Washington*, I’m going to reblog a post from Jan. 8, 2012, along with a new UPDATE (following a video we include as an experiment). The new material will be in red (slight differences in notation are explicated within links).

(A)  “It is not uncommon to see statistics texts argue that in frequentist theory one is faced with the following dilemma: either to deny the appropriateness of conditioning on the precision of the tool chosen by the toss of a coin[i], or else to embrace the strong likelihood principle which entails that frequentist sampling distributions are irrelevant to inference once the data are obtained.  This is a false dilemma … The ‘dilemma’ argument is therefore an illusion”. (Cox and Mayo 2010, p. 298)

The “illusion” stems from the sleight of hand I have been explaining in the Birnbaum argument—it starts with Birnbaumization. Read more »

Categories: Birnbaum Brakes, Likelihood Principle, Statistics | 9 Comments

Announcement: U-Phil Extension: Blogging the Likelihood Principle

U-Phil: I am extending to Dec. 19, 2012 the date for sending me responses to the “U-Phil” call, see initial call, given some requests for more time. The details of the specific U-Phil may be found here, but you might also look at the post relating to my 28 Nov. seminar at the LSE, which is directly on the topic: the infamous (strong) likelihood principle (SLP). ”U-Phil, ” which is short for “you ‘philosophize’” is really just an opportunity to write something .5-1 notch above an ordinary comment (focussed on one or more specific posts/papers, as described in each call): it can be longer (~500-1000 words), and it appears in the regular blog area rather than as a comment.  Your remarks can relate to the guest graduate student post by Gregory Gandenberger, and/or my discussion/argument. Graduate student posts (e.g., attendees of my 28 Nov. LSE seminar?) are especially welcome*. Earlier explemplars of U-Phils may be found here; and more by searching this blog.

Thanks to everyone who sent me names of vintage typewriter repair shops in London, after the airline damage: the “x” is fixed, but the “z” key is still misbehaving.

*Another post of possible relevance to graduate students comes up when searching this blog for  “sex”.

Categories: Announcement, Likelihood Principle, U-Phil | Leave a comment

Error Statistics (brief overview)

In view of some questions about “behavioristic” vs “evidential” construals of frequentist statistics (from the last post), and how the error statistical philosophy tries to improve on Birnbaum’s attempt at providing the latter, I’m reblogging a portion of a post from Nov. 5, 2011 when I also happened to be in London. (The beginning just records a goofy mishap with a skeletal key, and so I leave it out in this reblog.) Two papers with much more detail are linked at the end.

Error Statistics

(1) There is a “statistical philosophy” and a philosophy of science. (a) An error-statistical philosophy alludes to the methodological principles and foundations associated with frequentist error-statistical methods. (b) An error-statistical philosophy of science, on the other hand, involves using the error-statistical methods, formally or informally, to deal with problems of philosophy of science: to model scientific inference (actual or rational), to scrutinize principles of inference, and to address philosophical problems about evidence and inference (the problem of induction, underdetermination, warranting evidence, theory testing, etc.). Read more »

Categories: Error Statistics, Philosophy of Statistics, Statistics | Tags: , , | 10 Comments

Blogging Birnbaum: on Statistical Methods in Scientific Inference

I said I’d make some comments on Birnbaum’s letter (to Nature), (linked in my last post), which is relevant to today’s Seminar session (at the LSE*), as well as to (Normal Deviate‘s) recent discussion of frequentist inference–in terms of constructing procedures with good long-run “coverage”. (Also to the current U-Phil).

NATURE VOL. 225 MARCH 14, 1970 (1033)

LETTERS TO THE EDITOR

Statistical methods in Scientific Inference

 It is regrettable that Edwards’s interesting article[1], supporting the likelihood and prior likelihood concepts, did not point out the specific criticisms of likelihood (and Bayesian) concepts that seem to dissuade most theoretical and applied statisticians from adopting them. As one whom Edwards particularly credits with having ‘analysed in depth…some attractive properties” of the likelihood concept, I must point out that I am not now among the ‘modern exponents” of the likelihood concept. Further, after suggesting that the notion of prior likelihood was plausible as an extension or analogue of the usual likelihood concept (ref.2, p. 200)[2], I have pursued the matter through further consideration and rejection of both the likelihood concept and various proposed formalizations of prior information and opinion (including prior likelihood).  I regret not having expressed my developing views in any formal publication between 1962 and late 1969 (just after ref. 1 appeared). My present views have now, however, been published in an expository but critical article (ref. 3, see also ref. 4)[3] [4], and so my comments here will be restricted to several specific points that Edwards raised. Read more »

Categories: Likelihood Principle, Statistics, U-Phil | 5 Comments

Likelihood Links [for 28 Nov. Seminar and Current U-Phil]

old blogspot typewriterDear Reader: We just arrived in London[i][ii]. Jean Miller has put together some materials for Birnbaum LP aficionados in connection with my 28 November seminar. Great to have ready links to some of the early comments and replies by Birnbaum, Durbin, Kalbfleish and others, possibly of interest to those planning contributions to the current “U-Phil“.  I will try to make some remarks on Birnbaum’s 1970 letter to the editor tomorrow.

November 28th reading

Categories: Birnbaum Brakes, Likelihood Principle, U-Phil | Leave a comment

Announcement: 28 November: My Seminar at the LSE (Contemporary PhilStat)

28 November: (10 – 12 noon):
Mayo: “On Birnbaum’s argument for the Likelihood Principle: A 50-year old error and its influence on statistical foundations”
PH500 Seminar, Room: Lak 2.06 (Lakatos building). 
London School of Economics and Political Science (LSE)

Background reading: PAPER

See general announcement here.

Background to the Discussion: Question: How did I get involved in disproving Birnbaum’s result in 2006?

Answer: Appealing to something called the “weak conditionality principle (WCP)” arose in avoiding a classic problem (arising from mixture tests) described by David Cox (1958), as discussed in our joint paper:

Cox D. R. and Mayo. D. (2010). “Objectivity and Conditionality in Frequentist Inference” in Error and Inference: Recent Exchanges on Experimental Reasoning, Reliability and the Objectivity and Rationality of Science (D Mayo & A. Spanos eds.), CUP 276-304. Read more »

Categories: Announcement, Likelihood Principle, Statistics | 12 Comments

Irony and Bad Faith: Deconstructing Bayesians-reblog

 The recent post by Normal Deviate, and my comments on it, remind me of why/how I got back into the Bayesian-frequentist debates in 2006, as described in my first “deconstruction” (and “U-Phil”) on this blog (Dec 11, 2012):

Some time in 2006 (shortly after my ERROR06 conference), the trickle of irony and sometime flood of family feuds issuing from Bayesian forums drew me back into the Bayesian-frequentist debates.1 2  Suddenly sparks were flying, mostly kept shrouded within Bayesian walls, but nothing can long be kept secret even there. Spontaneous combustion is looming. The true-blue subjectivists were accusing the increasingly popular “objective” and “reference” Bayesians of practicing in bad faith; the new O-Bayesians (and frequentist-Bayesian unificationists) were taking pains to show they were not subjective; and some were calling the new Bayesian kids on the block “pseudo Bayesian.” Then there were the Bayesians somewhere in the middle (or perhaps out in left field) who, though they still use the Bayesian umbrella, were flatly denying the very idea that Bayesian updating fits anything they actually do in statistics.3 Obeisance to Bayesian reasoning remained, but on some kind of a priori philosophical grounds. Doesn’t the methodology used in practice really need a philosophy of its own? I say it does, and I want to provide this. Read more »

Categories: Likelihood Principle, objective Bayesians, Statistics | Tags: , , , , | 33 Comments

Comments on Wasserman’s “what is Bayesian/frequentist inference?”

What I like best about Wasserman’s blogpost (Normal Deviate) is his clear denial that merely using conditional probability makes the method Bayesian (even if one chooses to call the conditional probability theorem Bayes’s theorem, and even if one is using ‘Bayes’s’ nets). Else any use of probability theory is Bayesian, which trivializes the whole issue. Thus, the fact that conditional probability is used in an application with possibly good results is not evidence of (yet another) Bayesian success story [i].

But I do have serious concerns that in his understandable desire (1) to be even-handed (hammers and screwdrivers are for different purposes, both perfectly kosher tools), as well as (2) to give a succinct sum-up of methods,Wasserman may encourage misrepresenting positions. Speaking only for “frequentist” sampling theorists [ii], I would urge moving away from the recommended quick sum-up of “the goal” of frequentist inference: “Construct procedures with frequency guarantees”. If by this Wasserman means that the direct aim is to have tools with “good long run properties”, that rarely err in some long run series of applications, then I think it is misleading. In the context of scientific inference or learning, such a long-run goal, while necessary is not at all sufficient; moreover, I claim, that satisfying this goal is actually just a byproduct of deeper inferential goals (controlling and evaluating how severely given methods are capable of revealing/avoiding erroneous statistical interpretations of data in the case at hand.) (So I deny that it is even the main goal to which frequentist methods direct themselves.) Even arch behaviorist Neyman used power post-data to ascertain how well corroborated various hypotheses were—never mind long-run repeated applications (see one of my Neyman’s Nursery posts). Read more »

Categories: Error Statistics, Neyman's Nursery, Philosophy of Statistics, Statistics | 21 Comments

PhilStat: So you’re looking for a Ph.D dissertation topic?

Maybe you’ve already heard Hal Varian, Google’s chief economist: “The next sexy job in the next ten years will be statisticians.” Even Larry Wasserman declares that “statistics is sexy.” In that case, philosophy of statistics must be doubly so!

Thus one wonders at the decline of late in the lively and long-standing exchange between philosophers of science and statisticians. If you are a graduate student wondering how you might make your mark in a philosophy of science area, philosophy of statistical science, fairly brimming over with rich and open philosophical problems, may be the thing for you!* Surprising, pressing, intriguing, and novel philosophical twists on both traditional and cutting-edge controversies are going begging for analysis—they not only bear on many areas of popular philosophy but also may offer you ways of getting out in front of them.

I came across a spotty blog by Pitt graduate student Gregory Gandenberger awhile back (not like his new, frequently updated one) where he was wrestling with a topic for his masters thesis, and some years later, wrangling over dissertation topics in philosophy of statistics. After I started this blog, I looked for it again, and now I’ve invited him to post, on the topic of his choice, as he did here, and I invite other graduate students though the U-Phil call. Read more »

Categories: Error Statistics, philosophy of science, Philosophy of Statistics | 3 Comments

U-Phil: Blogging the Likelihood Principle: New Summary

U-Phil: I would like to open up this post, together with Gandenberger’s (Oct. 30, 2012), to reader U-Phils, from December 6- 19 (< 1000 words) for posting on this blog (please see # at bottom of post).  Where Gandenberger claims, “Birnbaum’s proof is valid and his premises are intuitively compelling,” I have shown that if Birnbaum’s premises are interpreted so as to be true, the argument is invalid.  If construed as formally valid, I argue, the premises contradict each other. Who is right?  Gandenberger doesn’t wrestle with my critique of Birnbaum, but I invite you (and Greg!) to do so. I’m pasting a new summary of my argument below.

 The main premises may be found on pp. 11-14. While these points are fairly straightforward (and do not require technical statistics), they offer an intriguing logical, statistical and linguistic puzzle. The following is an overview of my latest take on the Birnbaum argument. See also “Breaking Through the Breakthrough” posts: Dec. 6 and Dec 7, 2011.

Gandenberger also introduces something called the methodological likelihood principle. A related idea for a U-Phil is to ask: can one mount a sound, non-circular argument for that variant?  And while one is at it, do his methodological variants of sufficiency and conditionality yield plausible principles?

Graduate students and others invited!

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New Summary of Mayo Critique of Birnbaum’s Argument for the SLP
Deborah Mayo
See also a (draft) of the full PAPER corresponding to this summary. Yet other links to the Strong Likelihood Principle SLP: Mayo 2010; Cox & Mayo 2011 (appendix).

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Categories: Likelihood Principle, Statistics, U-Phil | 19 Comments

Guest Post: Greg Gandenberger, “Evidential Meaning and Methods of Inference”

Evidential Meaning and Methods of Inference

Greg Gandenberger
PhD student, History and Philosophy of Science
Master’s student, Statistics
University of Pittsburgh

Bayesian methods conform to the Likelihood Principle, while frequentist methods do not.  Thus, proofs of the Likelihood Principle* such as Birnbaum’s (1962) appear to be threats to frequentist positions.  Deborah Mayo has recently argued that Birnbaum’s proof is no threat to frequentist positions because it is invalid (Ch. 7(III) in Mayo and Spanos 2010).  In my view, Birnbaum’s proof is valid and his premises are intuitively compelling.  Nevertheless, I agree with Professor Mayo that the proof, properly understood, does not imply that frequentist methods should not be used.

There are actually at least two different Likelihood Principles: one, which I call the Evidential Likelihood Principle, says that the evidential meaning of an experimental outcome with respect to a set of hypotheses depends only on its likelihood function for those hypothesis (i.e., the function that maps each of those hypotheses to the probability it assigns to that outcome, defined up to a constant of proportionality); the other, which I call the Methodological Likelihood Principle, says that a statistical method should not be used if it can generate different conclusions from outcomes that have the same likelihood function, without a relevant difference in utilities or prior probabilities. Read more »

Categories: Likelihood Principle | 17 Comments

Reblogging: Oxford Gaol: Statistical Bogeymen

Reblogging 1 year ago in Oxford: Oxford Jail is an entirely fitting place to be on Halloween!

Moreover, rooting around this rather lavish set of jail cells (what used to be a single cell is now a dressing room) is every bit as conducive to philosophical reflection as is exile on Elba!  My goal (while in this gaol—as the English sometimes spell it) is to try and free us from the bogeymen and bogeywomen often associated with “classical” statistics. As a start, the very term “classical statistics” should I think be shelved, not that names should matter.

In appraising statistical accounts at the foundational level, we need to realize the extent to which accounts are viewed through the eyeholes of a mask or philosophical theory.  Moreover, the mask some wear while pursuing this task might well be at odds with their ordinary way of looking at evidence, inference, and learning. In any event, to avoid non-question-begging criticisms, the standpoint from which the appraisal is launched must itself be independently defended.   But for Bayesian critics of error statistics the assumption that uncertain inference demands a posterior probability for claims inferred is thought to be so obvious as not to require support. Critics are implicitly making assumptions that are at odds with the frequentist statistical philosophy. In particular, they assume a certain philosophy about statistical inference (probabilism), often coupled with the allegation that error statistical methods can only achieve radical behavioristic goals, wherein all that matters are long-run error rates (of some sort) Read more »

Categories: Error Statistics, Philosophy of Statistics | Tags: , | Leave a comment

Mayo: (section 7) “StatSci and PhilSci: part 2″

Here is the final section (7) of my new paper: “Statistical Science Meets Philosophy of Science Part 2” SS & POS 2.* Section 6 is in my last post.

7. Can/Should Bayesian and Error Statistical Philosophies Be Reconciled?

Stephen Senn makes a rather startling but doubtlessly true remark:

The late and great George Barnard, through his promotion of the likelihood principle, probably did as much as any statistician in the second half of the last century to undermine the foundations of the then dominant Neyman-Pearson framework and hence prepare the way for the complete acceptance of Bayesian ideas that has been predicted will be achieved by the De Finetti-Lindley limit of 2020. (Senn 2008, 459)

Many do view Barnard as having that effect, even though he himself rejected the likelihood principle (LP). One can only imagine Savage’s shock at hearing that contemporary Bayesians (save true subjectivists) are lukewarm about the LP! The 2020 prediction could come to pass, only to find Bayesians practicing in bad faith. Kadane, one of the last of the true Savage Bayesians, is left to wonder at what can only be seen as a Pyrrhic victory for Bayesians.

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Categories: Error Statistics, Philosophy of Statistics, Statistics | Leave a comment

Mayo: (section 6) “StatSci and PhilSci: part 2″

Here is section 6 of my new paper: “Statistical Science Meets Philosophy of Science Part 2: Shallow versus Deep Explorations” SS & POS 2. Section 5 is in my last post.

6. Some Knock-Down Criticisms of Frequentist Error Statistics

 With the error-statistical philosophy of inference under our belts, it is easy to run through the classic and allegedly damning criticisms of frequentist errorstatistical methods. Open up Bayesian textbooks and you will find, endlessly reprised, the handful of ‘counterexamples’ and ‘paradoxes’ that make up the charges leveled against frequentist statistics, after which the Bayesian account is proffered as coming to the rescue. There is nothing about how frequentists have responded to these charges; nor evidence that frequentist theory endorses the applications or interpretations around which these ‘chestnuts’ revolve.

If frequentist and Bayesian philosophies are to find common ground, this should stop. The value of a generous interpretation of rival views should cut both ways. A key purpose of the forum out of which this paper arises is to encourage reciprocity.

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Categories: Error Statistics, philosophy of science, Philosophy of Statistics | 1 Comment

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