Posts Tagged With: P-value

David Hand: Trustworthiness of Statistical Analysis (LSE PH 500 presentation)

Posted on June 26, 2020 by Mayo

This was David Hand’s guest presentation (25 June) at our zoomed graduate research seminar (LSE PH500) on Current Controversies in Phil Stat (~30 min.)  I’ll make some remarks in the comments, and invite yours.

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Trustworthiness of Statistical Analysis

David Hand

Abstract: Trust in statistical conclusions derives from the trustworthiness of the data and analysis methods. Trustworthiness of the analysis methods can be compromised by misunderstanding and incorrect application. However, that should stimulate a call for education and regulation, to ensure that methods are used correctly. The alternative of banning potentially useful methods, on the grounds that they are often misunderstood and misused is short-sighted, unscientific, and Procrustean. It damages the capability of science to advance, and feeds into public mistrust of the discipline.

Below are Prof.Hand’s slides w/o audio, followed by a video w/audio. You can also view them on the Meeting #6 post on the PhilStatWars blog (https://phil-stat-wars.com/2020/06/21/meeting-6-june-25/). Continue reading →

Categories: LSE PH 500 | Tags: , , , , , ,

Bad news bears: ‘Bayesian bear’ rejoinder-reblog mashup

Posted on July 6, 2013 by Mayo

Oh No! It’s those mutant bears again. To my dismay, I’ve been sent, for the third time, that silly, snarky, adolescent, clip of those naughty “what the p-value” bears (first posted on Aug 5, 2012), who cannot seem to get a proper understanding of significance tests into their little bear brains. So apparently some people haven’t seen my rejoinder which, as I said then, practically wrote itself. So since it’s Saturday night here at the Elbar Room, let’s listen in to a mashup of both the clip and my original rejoinder (in which p-value bears are replaced with hypothetical Bayesian bears). 

These stilted bear figures and their voices are sufficiently obnoxious in their own right, even without the tedious lampooning of p-values and the feigned horror at learning they should not be reported as posterior probabilities.

Mayo’s Rejoinder:

Bear #1: Do you have the results of the study?

Bear #2:Yes. The good news is there is a .996 probability of a positive difference in the main comparison.

Bear #1: Great. So I can be well assured that there is just a .004 probability that such positive results would occur if they were merely due to chance.

Bear #2: Not really, that would be an incorrect interpretation. Continue reading →

Categories: Bayesian/frequentist, Comedy, P-values, Statistics | Tags: , , ,

Anything Tests Can do, CIs do Better; CIs Do Anything Better than Tests?* (reforming the reformers cont.)

Posted on June 6, 2013 by Mayo

Having reblogged the 5/17/12 post on “reforming the reformers” yesterday, I thought I should reblog its follow-up: 6/2/12.

Consider again our one-sided Normal test T+, with null H0: μ < μ0 vs μ >μ0  and  μ0 = 0,  α=.025, and σ = 1, but let n = 25. So M is statistically significant only if it exceeds .392. Suppose M (the sample mean) just misses significance, say

Mo = .39.

The flip side of a fallacy of rejection (discussed before) is a fallacy of acceptance, or the fallacy of misinterpreting statistically insignificant results.  To avoid the age-old fallacy of taking a statistically insignificant result as evidence of zero (0) discrepancy from the null hypothesis μ =μ0, we wish to identify discrepancies that can and cannot be ruled out.  For our test T+, we reason from insignificant results to inferential claims of the form:

μ < μ0 + γ

Fisher continually emphasized that failure to reject was not evidence for the null.  Neyman, we saw, in chastising Carnap, argued for the following kind of power analysis:

Neymanian Power Analysis (Detectable Discrepancy Size DDS): If data x are not statistically significantly different from H0, and the power to detect discrepancy γ is high (low), then x constitutes good (poor) evidence that the actual effect is < γ. (See 11/9/11 post).

By taking into account the actual x0, a more nuanced post-data reasoning may be obtained.

“In the Neyman-Pearson theory, sensitivity is assessed by means of the power—the probability of reaching a preset level of significance under the assumption that various alternative hypotheses are true. In the approach described here, sensitivity is assessed by means of the distribution of the random variable P, considered under the assumption of various alternatives. “ (Cox and Mayo 2010, p. 291):

This may be captured in :

FEV(ii): A moderate p-value is evidence of the absence of a discrepancy d from Ho only if there is a high probability the test would have given a worse fit with H0 (i.e., a smaller p value) were a discrepancy d to exist. (Mayo and Cox 2005, 2010, 256).

This is equivalently captured in the Rule of Acceptance (Mayo (EGEK) 1996, and in the severity interpretation for acceptance, SIA, Mayo and Spanos (2006, p. 337):

SIA: (a): If there is a very high probability that [the observed difference] would have been larger than it is, were μ > μ1, then μ < μ1 passes the test with high severity,…

But even taking tests and CIs just as we find them, we see that CIs do not avoid the fallacy of acceptance: they do not block erroneous construals of negative results adequately. Continue reading →

Categories: CIs and tests, Error Statistics, reformers, Statistics | Tags: , , , , , , ,

A “Bayesian Bear” rejoinder practically writes itself…

Posted on August 5, 2012 by Mayo

These stilted bear figures and their voices are sufficiently obnoxious in their own right, even without the tedious lampooning of p-values and the feigned horror at learning they should not be reported as posterior probabilities. Coincidentally, I have been sent several different p-value U-Tube clips in the past two weeks, rehearsing essentially the same interpretive issues, but this one (“what the p-value”*) was created by some freebee outfit that will apparently set their irritating cartoon bear voices to your very own dialogue (I don’t know the website or outfit.)

The presumption is that somehow there would be no questions or confusion of interpretation were the output in the form of a posterior probability. The problem of indicating the extent of discrepancies that are/are not warranted by a given p-value is genuine but easy enough to solve**. What I never understand is why it is presupposed that the most natural and unequivocal way to interpret and communicate evidence (in this case, leading to low p-values) is by means of a (posterior) probability assignment, when it seems clear that the more relevant question the testy-voiced (“just wait a tick”) bear would put to the know-it-all bear would be: how often would this method erroneously declare a genuine discrepancy? A corresponding “Bayesian bear” video practically writes itself, but I’ll let you watch this first. Share any narrative lines that come to mind.

*Reference: Blume, J. and J. F. Peipert (2003). “What your statistician never told you about P-values.” J Am Assoc Gynecol Laparosc 10(4): 439-444.

**See for example, Mayo & Spanos (2011) ERROR STATISTICS

Categories: Statistics | Tags: , , ,

G. Cumming Response: The New Statistics

Posted on June 17, 2012 by Mayo

Prof. Geoff Cumming [i] has taken up my invite to respond to “Do CIs Avoid Fallacies of Tests? Reforming the Reformers” (May 17th), reposted today as well. (I extend the same invite to anyone I comment on, whether it be in the form of a comment or full post).   He reviews some of the complaints against p-values and significance tests, but he has not here responded to the particular challenge I raise: to show how his appeals to CIs avoid the fallacies and weakness of significance tests. The May 17 post focuses on the fallacy of rejection; the one from June 2, on the fallacy of acceptance. In each case, one needs to supplement his CIs with something along the lines of the testing scrutiny offered by SEV. At the same time, a SEV assessment avoids the much-lampooned uses of p-values–or so I have argued. He does allude to a subsequent post, so perhaps he will address these issues there.

The New Statistics

PROFESSOR GEOFF CUMMING [ii] (submitted June 13, 2012)

I’m new to this blog—what a trove of riches! I’m prompted to respond by Deborah Mayo’s typically insightful post of 17 May 2012, in which she discussed one-sided tests and referred to my discussion of one-sided CIs (Cumming, 2012, pp 109-113). A central issue is:

Cumming (quoted by Mayo): as usual, the estimation approach is better

Mayo: Is it?

Lots to discuss there. In this first post I’ll outline the big picture as I see it.

‘The New Statistics’ refers to effect sizes, confidence intervals, and meta-analysis, which, of course, are not themselves new. But using them, and relying on them as the basis for interpretation, would be new for most researchers in a wide range of disciplines—that for decades have relied on null hypothesis significance testing (NHST). My basic argument for the new statistics rather than NHST is summarised in a brief magazine article (http://tiny.cc/GeoffConversation) and radio talk (http://tiny.cc/geofftalk). The website www.thenewstatistics.com has information about the book (Cumming, 2012) and ESCI software, which is a free download.

Continue reading →

Categories: Statistics | Tags: , , , , , , ,

Anything Tests Can do, CIs do Better; CIs Do Anything Better than Tests?* (reforming the reformers cont.)

Posted on June 2, 2012 by Mayo

*The title is to be sung to the tune of “Anything You Can Do I Can Do Better”  from one of my favorite plays, Annie Get Your Gun (‘you’ being replaced by ‘test’).

This post may be seen to continue the discussion in May 17 post on Reforming the Reformers.

Consider again our one-sided Normal test T+, with null H0: μ < μ0 vs μ >μ0  and  μ0 = 0,  α=.025, and σ = 1, but let n = 25. So M is statistically significant only if it exceeds .392. Suppose M just misses significance, say

Mo = .39.

The flip side of a fallacy of rejection (discussed before) is a fallacy of acceptance, or the fallacy of misinterpreting statistically insignificant results.  To avoid the age-old fallacy of taking a statistically insignificant result as evidence of zero (0) discrepancy from the null hypothesis μ =μ0, we wish to identify discrepancies that can and cannot be ruled out.  For our test T+, we reason from insignificant results to inferential claims of the form:

μ < μ0 + γ

Fisher continually emphasized that failure to reject was not evidence for the null.  Neyman, we saw, in chastising Carnap, argued for the following kind of power analysis:

Neymanian Power Analysis (Detectable Discrepancy Size DDS): If data x are not statistically significantly different from H0, and the power to detect discrepancy γ is high(low), then x constitutes good (poor) evidence that the actual effect is no greater than γ. (See 11/9/11 post)

By taking into account the actual x0, a more nuanced post-data reasoning may be obtained.

“In the Neyman-Pearson theory, sensitivity is assessed by means of the power—the probability of reaching a preset level of significance under the assumption that various alternative hypotheses are true. In the approach described here, sensitivity is assessed by means of the distribution of the random variable P, considered under the assumption of various alternatives. “ (Cox and Mayo 2010, p. 291):

Continue reading →

Categories: Reformers: Prionvac, Statistics | Tags: , , , , , , ,

Do CIs Avoid Fallacies of Tests? Reforming the Reformers

Posted on May 17, 2012 by Mayo

The one method that enjoys the approbation of the New Reformers is that of confidence intervals (See May 12, 2012, and links). The general recommended interpretation is essentially this:

For a reasonably high choice of confidence level, say .95 or .99, values of µ within the observed interval are plausible, those outside implausible.

Geoff Cumming, a leading statistical reformer in psychology, has long been pressing for ousting significance tests (or NHST[1]) in favor of CIs. The level of confidence “specifies how confident we can be that our CI includes the population parameter m (Cumming 2012, p.69). He recommends prespecified confidence levels .9, .95 or .99:

“We can say we’re 95% confident our one-sided interval includes the true value. We can say the lower limit (LL) of the one-sided CI…is a likely lower bound for the true value, meaning that for 5% of replications the LL will exceed the true value. “ (Cumming 2012, p. 112)[2]

For simplicity, I will use the 2-standard deviation cut-off corresponding to the one-sided confidence level of ~.98.

However, there is a duality between tests and intervals (the intervals containing the parameter values not rejected at the corresponding level with the given data).[3]

“One-sided CIs are analogous to one-tailed tests but, as usual, the estimation approach is better.”

Is it?   Consider a one-sided test of the mean of a Normal distribution with n iid samples, and known standard deviation σ, call it test T+. Continue reading →

Categories: Statistics | Tags: , , , , , ,

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